Resource  

  • apache: Open Source Webserver
  • bash: Bourne Again Shell
  • blast: Stand-Alone Blast Programs from NCBI
  • ccp4: Computational Crystallography Suite
  • cns: Crystallography and NMR Suite
  • curves: Nucleic Acids Analysis
  • delphi: Calculation of Molecular Electrostatics
  • dssp2pdb: Convert DSSP output to PDB HELIX/SHEET Lines
  • emboss: Molecular Biology and Cloning Suite
  • extpdb: Extract Chains and Residues from PDB Files Easily
  • howto: James's How To Page For Unintuitive Molecular Graphics
  • gimp: Open Source Image Manipulation
  • make-na: Uses NAB and CNS to make B-DNA Easily (was make-bdna)
  • mapreg: Uses perl, ccp4, and mapman to cut regions from maps
  • mmtk: Macro Molecular Tool Kit (Calculate Energies, etc.)
  • molscript: Per Kraulis's Famous Program for Protein Schematics
  • mosflm: Data Processing for Crystallography
  • mysql: Open Relational Database
  • mysqldb: Python API to mysql
  • numarray: Python Array and Linear Algebra Package
  • o: Alwyn Jones's Famous Molecular Model Building Program
  • perl: The Open and Ubiquitous Scripting Language
  • phylip: Phylogenetic Analysis Suite
  • povray: The Classic 1997 POV-Ray 3.0 Manual
  • POVscript+: Tim Fenn's Powerful Extensions to Molscript
  • python: The Object Oriented Scripting Language
  • pyparsing: Simple Object Oriented Parsing for Python
  • rasmol: The Classic and Easy to Use Molecular Viewer
  • raster3d: Photorealistic Molecular Rendering
  • rbbnd: James's Tools to Use O as a Graphical Front End (Now rib_bone)
  • rib_bone: A Renamed and Improved Implementation of rbbnd
  • ribbons: Make Carson's Molecular Structure Schematic Program
  • Savvy: Draw a Plasmid Map Using SVG
  • simplejson: Encode and Decode json Formatted Data from Python
  • solve: Tom Terwilliger's Suite To Solve Crystallographic Phases
  • spdbv: The Easy to Use and Fairly Powerful Molecular Viewer
  • splitpdb: Splits a PDB File by Chains with One Command
  • stride: Assignment of Secondary Structure
  • stride2pdb: Converts Stride Output to PDB Helix/Sheet Lines
  • subversion: Open-Source Version Control System
  • ultrascan: Ultracentrifugation Data Analysis
  • usf: Crystallographic Software from Uppsala University
  • vtwm: The Virtual Tabbed Window Manager for X-Windows
  • x-windows: The Standard Unix Windowing System